35 lines
759 B
Bash
35 lines
759 B
Bash
#!/bin/bash
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#SBATCH -J correlate
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#SBATCH -o corr.%j.out
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#SBATCH -N 8
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#SBATCH -n 8
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#SBATCH -t 01:30:00
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#SBATCH -p broadwell
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NODEFILE=nodefile.txt
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rank=0
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echo $SLURM_NODELIST | tr -d c | tr -d [ | tr -d ] | perl -pe 's/(\d+)-(\d+)/join(",",$1..$2)/eg' | awk 'BEGIN { RS=","} { print "c"$1 }' > $NODEFILE
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for node in `cat $NODEFILE`; do
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ssh -n $node "[[ ! -f /tmp/ghaas/KEY ]] || mkdir -p /tmp/ghaas/ && tar -xf /home/ghaas/correlate/data00.tar.gz -C /tmp/ghaas" & pid[$rank]=$!
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(( rank++ ))
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done
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rank=0
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for node in `cat $NODEFILE`; do
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echo "waiting on" $rank
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wait ${pid[$rank]}
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(( rank++ ))
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done
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prun ./analyze /tmp/ghaas
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rank=0
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for node in `cat $NODEFILE`; do
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ssh -n $node "rm -r /tmp/ghaas" & pid[$rank]=$!
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(( rank++ ))
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done
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rm $NODEFILE |